HoloFood Data Portal

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MGYG000320806

Details for MGYG000320806, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Choladocola avistercoris Bacteria > Firmicutes_A > Clostridia > Lachnospirales > Lachnospiraceae > Choladocola > Choladocola avistercoris
Cluster representative

MGYG000309822

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000309822 on MGnify
 Show other genomes in cluster
Annotations

MGYG000320806’s cluster representative genome MGYG000309822 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000309822 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000320806 Copy API Endpoint
Samples containing this genome

MGYG000320806’s cluster representative (MGYG000309822) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000309822’s sequence. Because MGYG000320806 has been clustered with MGYG000309822 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000320806.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000309822

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Containment Sample accession Animal accession Treatment
1.00 SAMEA7025282 Control
1.00 SAMEA14095991 Control
1.00 SAMEA7571804 Prebiotic
1.00 SAMEA7025285 Control
1.00 SAMEA7571849 Prebiotic
1.00 SAMEA7571808 Control
1.00 SAMEA7697617 Prebiotic
1.00 SAMEA7697623 Probiotic
1.00 SAMEA7025277 Control
1.00 SAMEA9449949 Prebiotic