MGYG000320805

Taxonomy

Caccenecus avistercoris Bacteria > Firmicutes > Bacilli > RF39 > UBA660 > Caccenecus > Caccenecus avistercoris

Cluster representative

MGYG000320396

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000320396 on MGnify
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Annotations

MGYG000320805’s cluster representative genome MGYG000320396 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000320396 from each CAZy category.

API endpoint

/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000320805 Copy API Endpoint

MGYG000320805’s cluster representative (MGYG000320396) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000320396’s sequence. Because MGYG000320805 has been clustered with MGYG000320396 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000320805.

Filter containing samples

Sample accession contains

Sample animal accession contains

Minimum containment

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000320396

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Containment	Sample accession	Animal accession	Treatment
1.00	SAMEA7697617	SAMEA112905296	Prebiotic
1.00	SAMEA9449849	SAMEA112904926	Probiotic
1.00	SAMEA7025251	SAMEA112905290	Control
1.00	SAMEA7697623	SAMEA112905102	Probiotic
1.00	SAMEA7571843	SAMEA112904832	Prebiotic
1.00	SAMEA10145564	SAMEA112905104	Control
1.00	SAMEA7697576	SAMEA112904922	Prebiotic
1.00	SAMEA9449854	SAMEA112905061	Prebiotic
1.00	SAMEA9449907	SAMEA112905341	Prebiotic
1.00	SAMEA7025250	SAMEA112905214	Control