HoloFood Data Portal

Access samples and data collected and generated by the HoloFood project.

MGYG000320799

Details for MGYG000320799, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Blautia_A intestinipullorum Bacteria > Firmicutes_A > Clostridia > Lachnospirales > Lachnospiraceae > Blautia_A > Blautia_A intestinipullorum
Cluster representative

MGYG000309958

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000309958 on MGnify
 Show other genomes in cluster
Annotations

MGYG000320799’s cluster representative genome MGYG000309958 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000309958 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000320799 Copy API Endpoint
Samples containing this genome

MGYG000320799’s cluster representative (MGYG000309958) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000309958’s sequence. Because MGYG000320799 has been clustered with MGYG000309958 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000320799.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000309958

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Containment Sample accession Animal accession Treatment
0.24 SAMEA10104933 Control
0.24 SAMEA9449874 Prebiotic
0.24 SAMEA7571807 Probiotic
0.24 SAMEA10105056 Prebiotic
0.23 SAMEA10105013 Control
0.23 SAMEA7571785 Probiotic
0.23 SAMEA10104943 Probiotic
0.23 SAMEA9449918 Probiotic
0.23 SAMEA10455484 Prebiotic
0.22 SAMEA9449894 Probiotic