HoloFood Data Portal

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MGYG000320742

Details for MGYG000320742, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Caccovivens Bacteria > Firmicutes_A > Clostridia > Christensenellales > UBA1242 > Caccovivens
Cluster representative

MGYG000320742

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000320742 on MGnify
 Show other genomes in cluster
Annotations

MGYG000320742’s cluster representative genome MGYG000320742 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000320742 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000320742 Copy API Endpoint
Samples containing this genome

MGYG000320742’s cluster representative (MGYG000320742) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000320742’s sequence. Because MGYG000320742 has been clustered with MGYG000320742 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000320742.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000320742

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Containment Sample accession Animal accession Treatment
1.00 SAMEA10455477 Probiotic
0.62 SAMEA9449841 Probiotic
0.58 SAMEA9449938 Prebiotic
0.36 SAMEA10455483 Prebiotic
0.36 SAMEA7025248 Probiotic
0.36 SAMEA7025275 Probiotic
0.35 SAMEA7025242 Control
0.35 SAMEA10145601 Control
0.35 SAMEA7571801 Probiotic
0.34 SAMEA10455479 Prebiotic