HoloFood Data Portal

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MGYG000320615

Details for MGYG000320615, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Coproplasma Bacteria > Firmicutes_A > Clostridia > Christensenellales > Borkfalkiaceae > Coproplasma
Cluster representative

MGYG000320615

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000320615 on MGnify
 Show other genomes in cluster
Annotations

MGYG000320615’s cluster representative genome MGYG000320615 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000320615 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000320615 Copy API Endpoint
Samples containing this genome

MGYG000320615’s cluster representative (MGYG000320615) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000320615’s sequence. Because MGYG000320615 has been clustered with MGYG000320615 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000320615.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000320615

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Containment Sample accession Animal accession Treatment
0.57 SAMEA9449885 Control
0.56 SAMEA10104981 Probiotic
0.56 SAMEA7697586 Prebiotic
0.55 SAMEA10105025 Prebiotic
0.55 SAMEA10159265 Probiotic
0.54 SAMEA10145593 Control
0.54 SAMEA7025238 Probiotic
0.54 SAMEA7697602 Probiotic
0.53 SAMEA9449954 Probiotic
0.53 SAMEA7025275 Probiotic