HoloFood Data Portal

Access samples and data collected and generated by the HoloFood project.

MGYG000320576

Details for MGYG000320576, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Caccosoma faecigallinarum Bacteria > Firmicutes > Bacilli > RFN20 > CAG-631 > Caccosoma > Caccosoma faecigallinarum
Cluster representative

MGYG000319641

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000319641 on MGnify
 Show other genomes in cluster
Annotations

MGYG000320576’s cluster representative genome MGYG000319641 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000319641 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000320576 Copy API Endpoint
Samples containing this genome

MGYG000320576’s cluster representative (MGYG000319641) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000319641’s sequence. Because MGYG000320576 has been clustered with MGYG000319641 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000320576.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000319641

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Containment Sample accession Animal accession Treatment
0.32 SAMEA7697618 Prebiotic
0.32 SAMEA7025285 Control
0.32 SAMEA7697637 Prebiotic
0.31 SAMEA9449943 Control
0.31 SAMEA10105021 Probiotic
0.31 SAMEA7697592 Control
0.31 SAMEA10159246 Prebiotic
0.30 SAMEA9449886 Control
0.29 SAMEA10105015 Probiotic
0.28 SAMEA7571775 Control