MGYG000320541

Taxonomy

Coproplasma avistercoris Bacteria > Firmicutes_A > Clostridia > Christensenellales > Borkfalkiaceae > Coproplasma > Coproplasma avistercoris

Cluster representative

MGYG000315058

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000315058 on MGnify
 Show other genomes in cluster

Annotations

MGYG000320541’s cluster representative genome MGYG000315058 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000315058 from each CAZy category.

API endpoint

/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000320541 Copy API Endpoint

MGYG000320541’s cluster representative (MGYG000315058) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000315058’s sequence. Because MGYG000320541 has been clustered with MGYG000315058 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000320541.

Filter containing samples

Sample accession contains

Sample animal accession contains

Minimum containment

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000315058

 Download all as TSV

Containment	Sample accession	Animal accession	Treatment
0.21	SAMEA10105042	SAMEA112905339	Probiotic
0.21	SAMEA10105025	SAMEA112904944	Prebiotic
0.20	SAMEA9449852	SAMEA112904941	Prebiotic