HoloFood Data Portal

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MGYG000320473

Details for MGYG000320473, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
QAMM01 sp900552945 Bacteria > Firmicutes_A > Clostridia > Oscillospirales > Ruminococcaceae > QAMM01 > QAMM01 sp900552945
Cluster representative

MGYG000312060

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000312060 on MGnify
 Show other genomes in cluster
Annotations

MGYG000320473’s cluster representative genome MGYG000312060 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000312060 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000320473 Copy API Endpoint
Samples containing this genome

MGYG000320473’s cluster representative (MGYG000312060) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000312060’s sequence. Because MGYG000320473 has been clustered with MGYG000312060 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000320473.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000312060

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Containment Sample accession Animal accession Treatment
0.96 SAMEA14099424 Prebiotic
0.95 SAMEA7571827 Probiotic
0.94 SAMEA7025271 Probiotic
0.94 SAMEA7697603 Probiotic
0.92 SAMEA7025248 Probiotic
0.91 SAMEA9449926 Prebiotic
0.88 SAMEA7697623 Probiotic
0.88 SAMEA9449833 Probiotic
0.88 SAMEA9449927 Prebiotic
0.87 SAMEA10454442 Probiotic