HoloFood Data Portal

Access samples and data collected and generated by the HoloFood project.

MGYG000320471

Details for MGYG000320471, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Adamsella Bacteria > Cyanobacteria > Vampirovibrionia > Gastranaerophilales > CAJFVJ01 > Adamsella
Cluster representative

MGYG000315426

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000315426 on MGnify
 Show other genomes in cluster
Annotations

MGYG000320471’s cluster representative genome MGYG000315426 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000315426 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000320471 Copy API Endpoint
Samples containing this genome

MGYG000320471’s cluster representative (MGYG000315426) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000315426’s sequence. Because MGYG000320471 has been clustered with MGYG000315426 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000320471.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000315426

 Download all as TSV
Containment Sample accession Animal accession Treatment
0.26 SAMEA10105030 Prebiotic
0.26 SAMEA7697634 Control
0.26 SAMEA9449941 Prebiotic
0.25 SAMEA10104996 Prebiotic
0.25 SAMEA10145579 Control
0.23 SAMEA7368187 Control
0.22 SAMEA10104908 Control
0.22 SAMEA10104990 Prebiotic
0.22 SAMEA7571789 Probiotic
0.20 SAMEA9449888 Probiotic