HoloFood Data Portal

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MGYG000320462

Details for MGYG000320462, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
CAG-273 sp017886645 Bacteria > Firmicutes_A > Clostridia > TANB77 > CAG-508 > CAG-273 > CAG-273 sp017886645
Cluster representative

MGYG000314130

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000314130 on MGnify
 Show other genomes in cluster
Annotations

MGYG000320462’s cluster representative genome MGYG000314130 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000314130 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000320462 Copy API Endpoint
Samples containing this genome

MGYG000320462’s cluster representative (MGYG000314130) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000314130’s sequence. Because MGYG000320462 has been clustered with MGYG000314130 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000320462.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000314130

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Containment Sample accession Animal accession Treatment
0.22 SAMEA9449941 Prebiotic
0.22 SAMEA10104945 Probiotic
0.22 SAMEA10104959 Prebiotic
0.22 SAMEA10455499 Prebiotic
0.22 SAMEA7571843 Prebiotic
0.22 SAMEA7697626 Probiotic
0.22 SAMEA7025275 Probiotic
0.22 SAMEA7571775 Control
0.22 SAMEA7025269 Probiotic
0.22 SAMEA7025240 Probiotic