HoloFood Data Portal

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MGYG000320446

Details for MGYG000320446, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Akkermansia muciniphila Bacteria > Verrucomicrobiota > Verrucomicrobiae > Verrucomicrobiales > Akkermansiaceae > Akkermansia > Akkermansia muciniphila
Cluster representative

MGYG000318664

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000318664 on MGnify
 Show other genomes in cluster
Annotations

MGYG000320446’s cluster representative genome MGYG000318664 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000318664 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000320446 Copy API Endpoint
Samples containing this genome

MGYG000320446’s cluster representative (MGYG000318664) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000318664’s sequence. Because MGYG000320446 has been clustered with MGYG000318664 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000320446.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000318664

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Containment Sample accession Animal accession Treatment
0.22 SAMEA10104963 Control
0.22 SAMEA7571868 Prebiotic
0.22 SAMEA7697584 Control
0.22 SAMEA10130107 Probiotic
0.21 SAMEA7722476 Control
0.21 SAMEA7571814 Prebiotic
0.21 SAMEA10104923 Control
0.20 SAMEA9449954 Probiotic
0.20 SAMEA9449943 Control
0.20 SAMEA7025245 Probiotic