HoloFood Data Portal

Access samples and data collected and generated by the HoloFood project.

MGYG000320363

Details for MGYG000320363, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
UMGS1572 sp900553045 Bacteria > Firmicutes > Bacilli > RF39 > UBA660 > UMGS1572 > UMGS1572 sp900553045
Cluster representative

MGYG000314306

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000314306 on MGnify
 Show other genomes in cluster
Annotations

MGYG000320363’s cluster representative genome MGYG000314306 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000314306 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000320363 Copy API Endpoint
Samples containing this genome

MGYG000320363’s cluster representative (MGYG000314306) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000314306’s sequence. Because MGYG000320363 has been clustered with MGYG000314306 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000320363.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000314306

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Containment Sample accession Animal accession Treatment
1.00 SAMEA7571765 Probiotic
1.00 SAMEA7025242 Control
0.99 SAMEA7025251 Control
0.99 SAMEA7571819 Probiotic
0.99 SAMEA10159262 Prebiotic
0.99 SAMEA10104930 Control
0.99 SAMEA9449907 Prebiotic
0.99 SAMEA9449894 Probiotic
0.97 SAMEA7025236 Probiotic
0.97 SAMEA10104963 Control