HoloFood Data Portal

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MGYG000320270

Details for MGYG000320270, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Scatenecus faecavium Bacteria > Cyanobacteria > Vampirovibrionia > Gastranaerophilales > Gastranaerophilaceae > Scatenecus > Scatenecus faecavium
Cluster representative

MGYG000320270

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000320270 on MGnify
 Show other genomes in cluster
Annotations

MGYG000320270’s cluster representative genome MGYG000320270 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000320270 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000320270 Copy API Endpoint
Samples containing this genome

MGYG000320270’s cluster representative (MGYG000320270) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000320270’s sequence. Because MGYG000320270 has been clustered with MGYG000320270 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000320270.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000320270

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Containment Sample accession Animal accession Treatment
1.00 SAMEA7697613 Prebiotic
0.99 SAMEA7697626 Probiotic
0.98 SAMEA10145595 Control
0.96 SAMEA10105033 Prebiotic
0.79 SAMEA10145597 Control
0.65 SAMEA7571864 Probiotic
0.59 SAMEA7697624 Probiotic
0.54 SAMEA14409936 Control
0.37 SAMEA10145585 Control
0.37 SAMEA9449963 Probiotic