HoloFood Data Portal

Access samples and data collected and generated by the HoloFood project.

MGYG000320086

Details for MGYG000320086, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Aphodocola excrementigallinarum Bacteria > Firmicutes > Bacilli > RF39 > UBA660 > Aphodocola > Aphodocola excrementigallinarum
Cluster representative

MGYG000307793

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000307793 on MGnify
 Show other genomes in cluster
Annotations

MGYG000320086’s cluster representative genome MGYG000307793 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000307793 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000320086 Copy API Endpoint
Samples containing this genome

MGYG000320086’s cluster representative (MGYG000307793) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000307793’s sequence. Because MGYG000320086 has been clustered with MGYG000307793 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000320086.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000307793

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Containment Sample accession Animal accession Treatment
0.73 SAMEA10455495 Control
0.73 SAMEA9449856 Prebiotic
0.72 SAMEA9449849 Probiotic
0.70 SAMEA9449947 Prebiotic
0.68 SAMEA9449894 Probiotic
0.68 SAMEA7025276 Control
0.64 SAMEA7697624 Probiotic
0.64 SAMEA7571848 Prebiotic
0.63 SAMEA7697617 Prebiotic
0.59 SAMEA9449846 Prebiotic