HoloFood Data Portal

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MGYG000320061

Details for MGYG000320061, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
CAG-273 Bacteria > Firmicutes_A > Clostridia > TANB77 > CAG-508 > CAG-273
Cluster representative

MGYG000312160

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000312160 on MGnify
 Show other genomes in cluster
Annotations

MGYG000320061’s cluster representative genome MGYG000312160 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000312160 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000320061 Copy API Endpoint
Samples containing this genome

MGYG000320061’s cluster representative (MGYG000312160) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000312160’s sequence. Because MGYG000320061 has been clustered with MGYG000312160 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000320061.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000312160

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Containment Sample accession Animal accession Treatment
0.86 SAMEA7697626 Probiotic
0.86 SAMEA7697581 Probiotic
0.85 SAMEA10130088 Prebiotic
0.85 SAMEA7571785 Probiotic
0.84 SAMEA7571806 Control
0.84 SAMEA7697580 Probiotic
0.84 SAMEA9449907 Prebiotic
0.83 SAMEA10105047 Control
0.83 SAMEA7697592 Control
0.83 SAMEA9449874 Prebiotic