HoloFood Data Portal

Access samples and data collected and generated by the HoloFood project.

MGYG000320045

Details for MGYG000320045, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Onthocola_B Bacteria > Firmicutes > Bacilli > RF39 > UBA660 > Onthocola_B
Cluster representative

MGYG000318319

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000318319 on MGnify
 Show other genomes in cluster
Annotations

MGYG000320045’s cluster representative genome MGYG000318319 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000318319 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000320045 Copy API Endpoint
Samples containing this genome

MGYG000320045’s cluster representative (MGYG000318319) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000318319’s sequence. Because MGYG000320045 has been clustered with MGYG000318319 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000320045.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000318319

 Download all as TSV
Containment Sample accession Animal accession Treatment
0.68 SAMEA7025236 Probiotic
0.68 SAMEA7697575 Control
0.67 SAMEA9449866 Probiotic
0.67 SAMEA7025246 Probiotic
0.67 SAMEA7697599 Control
0.67 SAMEA9449913 Probiotic
0.67 SAMEA10104993 Prebiotic
0.66 SAMEA9449949 Prebiotic
0.65 SAMEA10455496 Control
0.65 SAMEA7571845 Control