HoloFood Data Portal

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MGYG000320014

Details for MGYG000320014, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Bilophila sp900550745 Bacteria > Desulfobacterota_I > Desulfovibrionia > Desulfovibrionales > Desulfovibrionaceae > Bilophila > Bilophila sp900550745
Cluster representative

MGYG000310465

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000310465 on MGnify
 Show other genomes in cluster
Annotations

MGYG000320014’s cluster representative genome MGYG000310465 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000310465 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000320014 Copy API Endpoint
Samples containing this genome

MGYG000320014’s cluster representative (MGYG000310465) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000310465’s sequence. Because MGYG000320014 has been clustered with MGYG000310465 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000320014.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000310465

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Containment Sample accession Animal accession Treatment
0.29 SAMEA7025270 Probiotic
0.27 SAMEA7697609 Probiotic
0.26 SAMEA10105067 Prebiotic
0.24 SAMEA10130088 Prebiotic
0.24 SAMEA10105072 Prebiotic
0.24 SAMEA10105041 Probiotic
0.24 SAMEA9449949 Prebiotic
0.23 SAMEA10145585 Control
0.22 SAMEA7571850 Prebiotic
0.20 SAMEA7697618 Prebiotic