HoloFood Data Portal

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MGYG000319961

Details for MGYG000319961, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Blautia stercorigallinarum Bacteria > Firmicutes_A > Clostridia > Lachnospirales > Lachnospiraceae > Blautia > Blautia stercorigallinarum
Cluster representative

MGYG000320616

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000320616 on MGnify
 Show other genomes in cluster
Annotations

MGYG000319961’s cluster representative genome MGYG000320616 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000320616 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000319961 Copy API Endpoint
Samples containing this genome

MGYG000319961’s cluster representative (MGYG000320616) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000320616’s sequence. Because MGYG000319961 has been clustered with MGYG000320616 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000319961.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000320616

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Containment Sample accession Animal accession Treatment
0.22 SAMEA7025268 Control
0.22 SAMEA10104968 Prebiotic
0.22 SAMEA10104937 Prebiotic
0.22 SAMEA7571826 Probiotic
0.22 SAMEA10454444 Probiotic
0.22 SAMEA7025258 Probiotic
0.22 SAMEA9449904 Control
0.22 SAMEA9449896 Prebiotic
0.22 SAMEA10455476 Probiotic
0.22 SAMEA7025246 Probiotic