HoloFood Data Portal

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MGYG000319960

Details for MGYG000319960, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Mediterraneibacter pullicola Bacteria > Firmicutes_A > Clostridia > Lachnospirales > Lachnospiraceae > Mediterraneibacter > Mediterraneibacter pullicola
Cluster representative

MGYG000318750

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000318750 on MGnify
 Show other genomes in cluster
Annotations

MGYG000319960’s cluster representative genome MGYG000318750 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000318750 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000319960 Copy API Endpoint
Samples containing this genome

MGYG000319960’s cluster representative (MGYG000318750) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000318750’s sequence. Because MGYG000319960 has been clustered with MGYG000318750 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000319960.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000318750

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Containment Sample accession Animal accession Treatment
0.99 SAMEA10105037 Probiotic
0.99 SAMEA10104915 Control
0.99 SAMEA10105012 Control
0.99 SAMEA7025255 Prebiotic
0.99 SAMEA7697613 Prebiotic
0.99 SAMEA7697578 Control
0.99 SAMEA7571823 Probiotic
0.99 SAMEA7697575 Control
0.99 SAMEA7571767 Control
0.99 SAMEA7025271 Probiotic