HoloFood Data Portal

Access samples and data collected and generated by the HoloFood project.

MGYG000319916

Details for MGYG000319916, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Avoscillospira stercoripullorum Bacteria > Firmicutes_A > Clostridia > Oscillospirales > Oscillospiraceae > Avoscillospira > Avoscillospira stercoripullorum
Cluster representative

MGYG000311133

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000311133 on MGnify
 Show other genomes in cluster
Annotations

MGYG000319916’s cluster representative genome MGYG000311133 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000311133 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000319916 Copy API Endpoint
Samples containing this genome

MGYG000319916’s cluster representative (MGYG000311133) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000311133’s sequence. Because MGYG000319916 has been clustered with MGYG000311133 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000319916.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000311133

 Download all as TSV
Containment Sample accession Animal accession Treatment
0.28 SAMEA7697598 Control
0.28 SAMEA7025235 Probiotic
0.27 SAMEA10104921 Prebiotic
0.27 SAMEA7025239 Probiotic
0.27 SAMEA10104996 Prebiotic
0.27 SAMEA7571832 Control
0.27 SAMEA10455485 Control
0.26 SAMEA10145589 Control
0.26 SAMEA10145593 Control
0.26 SAMEA9449941 Prebiotic