MGYG000319905

Taxonomy

Coproplasma excrementipullorum Bacteria > Firmicutes_A > Clostridia > Christensenellales > Borkfalkiaceae > Coproplasma > Coproplasma excrementipullorum

Cluster representative

MGYG000319310

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000319310 on MGnify
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Annotations

MGYG000319905’s cluster representative genome MGYG000319310 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000319310 from each CAZy category.

API endpoint

/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000319905 Copy API Endpoint

MGYG000319905’s cluster representative (MGYG000319310) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000319310’s sequence. Because MGYG000319905 has been clustered with MGYG000319310 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000319905.

Filter containing samples

Sample accession contains

Sample animal accession contains

Minimum containment

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000319310

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Containment	Sample accession	Animal accession	Treatment
1.00	SAMEA7697592	SAMEA112904737	Control
1.00	SAMEA10145575	SAMEA112904841	Control
1.00	SAMEA7025245	SAMEA112904855	Probiotic
1.00	SAMEA10104941	SAMEA112904809	Probiotic
1.00	SAMEA10104925	SAMEA112905338	Control
1.00	SAMEA10454442	SAMEA112905095	Probiotic
1.00	SAMEA7025256	SAMEA112905271	Prebiotic
1.00	SAMEA14095991	SAMEA112904755	Control
0.99	SAMEA10145556	SAMEA112904772	Control
0.99	SAMEA7571795	SAMEA112905322	Prebiotic