HoloFood Data Portal

Access samples and data collected and generated by the HoloFood project.

MGYG000319881

Details for MGYG000319881, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Massilicoli timonensis Bacteria > Firmicutes > Bacilli > Erysipelotrichales > Erysipelotrichaceae > Massilicoli > Massilicoli timonensis
Cluster representative

MGYG000316299

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000316299 on MGnify
 Show other genomes in cluster
Annotations

MGYG000319881’s cluster representative genome MGYG000316299 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000316299 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000319881 Copy API Endpoint
Samples containing this genome

MGYG000319881’s cluster representative (MGYG000316299) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000316299’s sequence. Because MGYG000319881 has been clustered with MGYG000316299 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000319881.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000316299

 Download all as TSV
Containment Sample accession Animal accession Treatment
0.89 SAMEA7697623 Probiotic
0.89 SAMEA7025242 Control
0.89 SAMEA10104992 Prebiotic
0.89 SAMEA14095989 Prebiotic
0.89 SAMEA9449841 Probiotic
0.89 SAMEA14095991 Control
0.88 SAMEA10104929 Prebiotic
0.88 SAMEA14099421 Control
0.88 SAMEA9449944 Control
0.88 SAMEA7025245 Probiotic