MGYG000319859

Taxonomy

CAG-465 Bacteria > Firmicutes_A > Clostridia > TANB77 > CAG-465 > CAG-465

Cluster representative

MGYG000308428

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000308428 on MGnify
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Annotations

MGYG000319859’s cluster representative genome MGYG000308428 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000308428 from each CAZy category.

API endpoint

/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000319859 Copy API Endpoint

MGYG000319859’s cluster representative (MGYG000308428) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000308428’s sequence. Because MGYG000319859 has been clustered with MGYG000308428 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000319859.

Filter containing samples

Sample accession contains

Sample animal accession contains

Minimum containment

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000308428

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Containment	Sample accession	Animal accession	Treatment
0.21	SAMEA10145585	SAMEA112905186	Control
0.21	SAMEA7571829	SAMEA112905154	Prebiotic
0.21	SAMEA7571843	SAMEA112904832	Prebiotic
0.20	SAMEA9449890	SAMEA112904839	Probiotic
0.20	SAMEA7025250	SAMEA112905214	Control
0.20	SAMEA10145575	SAMEA112904841	Control
0.20	SAMEA10104938	SAMEA112904831	Prebiotic