HoloFood Data Portal

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MGYG000319713

Details for MGYG000319713, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Blautia_A intestinigallinarum Bacteria > Firmicutes_A > Clostridia > Lachnospirales > Lachnospiraceae > Blautia_A > Blautia_A intestinigallinarum
Cluster representative

MGYG000310290

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000310290 on MGnify
 Show other genomes in cluster
Annotations

MGYG000319713’s cluster representative genome MGYG000310290 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000310290 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000319713 Copy API Endpoint
Samples containing this genome

MGYG000319713’s cluster representative (MGYG000310290) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000310290’s sequence. Because MGYG000319713 has been clustered with MGYG000310290 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000319713.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000310290

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Containment Sample accession Animal accession Treatment
0.27 SAMEA7025271 Probiotic
0.27 SAMEA7697633 Prebiotic
0.27 SAMEA7025280 Probiotic
0.27 SAMEA10145585 Control
0.27 SAMEA9449916 Probiotic
0.27 SAMEA9449901 Prebiotic
0.27 SAMEA10104926 Prebiotic
0.26 SAMEA7697600 Prebiotic
0.26 SAMEA7571781 Control
0.25 SAMEA10104918 Probiotic