HoloFood Data Portal

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MGYG000319500

Details for MGYG000319500, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
CAG-273 Bacteria > Firmicutes_A > Clostridia > TANB77 > CAG-508 > CAG-273
Cluster representative

MGYG000317058

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000317058 on MGnify
 Show other genomes in cluster
Annotations

MGYG000319500’s cluster representative genome MGYG000317058 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000317058 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000319500 Copy API Endpoint
Samples containing this genome

MGYG000319500’s cluster representative (MGYG000317058) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000317058’s sequence. Because MGYG000319500 has been clustered with MGYG000317058 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000319500.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000317058

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Containment Sample accession Animal accession Treatment
0.97 SAMEA10104937 Prebiotic
0.97 SAMEA10104993 Prebiotic
0.97 SAMEA10104981 Probiotic
0.96 SAMEA10104938 Prebiotic
0.92 SAMEA10105021 Probiotic
0.91 SAMEA9449885 Control
0.86 SAMEA7571806 Control
0.86 SAMEA10104930 Control
0.86 SAMEA9449864 Control
0.85 SAMEA7571778 Control