MGYG000319253

Taxonomy

Alistipes putredinis Bacteria > Bacteroidota > Bacteroidia > Bacteroidales > Rikenellaceae > Alistipes > Alistipes putredinis

Cluster representative

MGYG000319253

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000319253 on MGnify
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Annotations

MGYG000319253’s cluster representative genome MGYG000319253 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000319253 from each CAZy category.

API endpoint

/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000319253 Copy API Endpoint

MGYG000319253’s cluster representative (MGYG000319253) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000319253’s sequence. Because MGYG000319253 has been clustered with MGYG000319253 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000319253.

Filter containing samples

Sample accession contains

Sample animal accession contains

Minimum containment

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000319253

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Containment	Sample accession	Animal accession	Treatment
1.00	SAMEA9449907	SAMEA112905341	Prebiotic
1.00	SAMEA10104961	SAMEA112904891	Probiotic
1.00	SAMEA10104967	SAMEA112905126	Prebiotic
0.99	SAMEA7025269	SAMEA112904942	Probiotic
0.98	SAMEA14095991	SAMEA112904755	Control
0.98	SAMEA7571821	SAMEA112905340	Probiotic
0.98	SAMEA10104991	SAMEA112904767	Prebiotic
0.98	SAMEA10145572	SAMEA112905165	Control
0.98	SAMEA10104973	SAMEA112904987	Probiotic
0.98	SAMEA10104987	SAMEA112905189	Control