HoloFood Data Portal

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MGYG000319071

Details for MGYG000319071, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
CAG-266 sp000436095 Bacteria > Firmicutes_C > Negativicutes > Acidaminococcales > Acidaminococcaceae > CAG-266 > CAG-266 sp000436095
Cluster representative

MGYG000310576

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000310576 on MGnify
 Show other genomes in cluster
Annotations

MGYG000319071’s cluster representative genome MGYG000310576 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000310576 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000319071 Copy API Endpoint
Samples containing this genome

MGYG000319071’s cluster representative (MGYG000310576) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000310576’s sequence. Because MGYG000319071 has been clustered with MGYG000310576 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000319071.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000310576

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Containment Sample accession Animal accession Treatment
0.54 SAMEA7571823 Probiotic
0.54 SAMEA7571870 Prebiotic
0.54 SAMEA7571844 Control
0.54 SAMEA9449949 Prebiotic
0.54 SAMEA7025274 Probiotic
0.54 SAMEA7025277 Control
0.54 SAMEA10145587 Control
0.54 SAMEA7697620 Prebiotic
0.53 SAMEA9449918 Probiotic
0.53 SAMEA7025285 Control