HoloFood Data Portal

Access samples and data collected and generated by the HoloFood project.

MGYG000318927

Details for MGYG000318927, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
CAG-266 sp000436095 Bacteria > Firmicutes_C > Negativicutes > Acidaminococcales > Acidaminococcaceae > CAG-266 > CAG-266 sp000436095
Cluster representative

MGYG000310576

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000310576 on MGnify
 Show other genomes in cluster
Annotations

MGYG000318927’s cluster representative genome MGYG000310576 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000310576 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000318927 Copy API Endpoint
Samples containing this genome

MGYG000318927’s cluster representative (MGYG000310576) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000310576’s sequence. Because MGYG000318927 has been clustered with MGYG000310576 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000318927.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000310576

 Download all as TSV
Containment Sample accession Animal accession Treatment
0.50 SAMEA7571839 Control
0.50 SAMEA7697628 Control
0.50 SAMEA7025276 Control
0.50 SAMEA10105030 Prebiotic
0.50 SAMEA7697611 Prebiotic
0.50 SAMEA10145593 Control
0.50 SAMEA7697609 Probiotic
0.49 SAMEA10130088 Prebiotic
0.48 SAMEA10145585 Control
0.41 SAMEA7571825 Probiotic