HoloFood Data Portal

Access samples and data collected and generated by the HoloFood project.

MGYG000318893

Details for MGYG000318893, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Ventrenecus Bacteria > Firmicutes > Bacilli > RF39 > UBA660 > Ventrenecus
Cluster representative

MGYG000311995

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000311995 on MGnify
 Show other genomes in cluster
Annotations

MGYG000318893’s cluster representative genome MGYG000311995 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000311995 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000318893 Copy API Endpoint
Samples containing this genome

MGYG000318893’s cluster representative (MGYG000311995) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000311995’s sequence. Because MGYG000318893 has been clustered with MGYG000311995 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000318893.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000311995

 Download all as TSV
Containment Sample accession Animal accession Treatment
0.42 SAMEA10455484 Prebiotic
0.41 SAMEA9449888 Probiotic
0.40 SAMEA10145601 Control
0.40 SAMEA10104915 Control
0.39 SAMEA7697616 Probiotic
0.39 SAMEA7025238 Probiotic
0.36 SAMEA10104985 Control
0.36 SAMEA7697583 Probiotic
0.36 SAMEA10104968 Prebiotic
0.35 SAMEA7697586 Prebiotic