HoloFood Data Portal

Access samples and data collected and generated by the HoloFood project.

MGYG000318883

Details for MGYG000318883, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
CAG-273 Bacteria > Firmicutes_A > Clostridia > TANB77 > CAG-508 > CAG-273
Cluster representative

MGYG000315312

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000315312 on MGnify
 Show other genomes in cluster
Annotations

MGYG000318883’s cluster representative genome MGYG000315312 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000315312 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000318883 Copy API Endpoint
Samples containing this genome

MGYG000318883’s cluster representative (MGYG000315312) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000315312’s sequence. Because MGYG000318883 has been clustered with MGYG000315312 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000318883.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000315312

 Download all as TSV
Containment Sample accession Animal accession Treatment
0.91 SAMEA10145583 Control
0.91 SAMEA7722479 Prebiotic
0.91 SAMEA9449935 Control
0.91 SAMEA10104993 Prebiotic
0.90 SAMEA10104928 Prebiotic
0.90 SAMEA7025275 Probiotic
0.90 SAMEA9449954 Probiotic
0.90 SAMEA10159244 Probiotic
0.90 SAMEA10145601 Control
0.90 SAMEA9449940 Prebiotic