MGYG000318503

Taxonomy

Coproplasma stercorigallinarum Bacteria > Firmicutes_A > Clostridia > Christensenellales > Borkfalkiaceae > Coproplasma > Coproplasma stercorigallinarum

Cluster representative

MGYG000311580

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000311580 on MGnify
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Annotations

MGYG000318503’s cluster representative genome MGYG000311580 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000311580 from each CAZy category.

API endpoint

/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000318503 Copy API Endpoint

MGYG000318503’s cluster representative (MGYG000311580) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000311580’s sequence. Because MGYG000318503 has been clustered with MGYG000311580 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000318503.

Filter containing samples

Sample accession contains

Sample animal accession contains

Minimum containment

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000311580

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Containment	Sample accession	Animal accession	Treatment
1.00	SAMEA10104953	SAMEA112904751	Prebiotic
1.00	SAMEA9449833	SAMEA112904807	Probiotic
1.00	SAMEA10455486	SAMEA112904923	Control
1.00	SAMEA7571795	SAMEA112905322	Prebiotic
1.00	SAMEA7697601	SAMEA112905311	Prebiotic
1.00	SAMEA7025248	SAMEA112905319	Probiotic
1.00	SAMEA7571813	SAMEA112905264	Prebiotic
1.00	SAMEA7025266	SAMEA112905005	Probiotic
1.00	SAMEA7025274	SAMEA112905263	Probiotic
1.00	SAMEA10105037	SAMEA112904745	Probiotic