MGYG000318153

Taxonomy

Gemmiger stercoripullorum Bacteria > Firmicutes_A > Clostridia > Oscillospirales > Ruminococcaceae > Gemmiger > Gemmiger stercoripullorum

Cluster representative

MGYG000307915

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000307915 on MGnify
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Annotations

MGYG000318153’s cluster representative genome MGYG000307915 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000307915 from each CAZy category.

API endpoint

/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000318153 Copy API Endpoint

MGYG000318153’s cluster representative (MGYG000307915) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000307915’s sequence. Because MGYG000318153 has been clustered with MGYG000307915 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000318153.

Filter containing samples

Sample accession contains

Sample animal accession contains

Minimum containment

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000307915

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Containment	Sample accession	Animal accession	Treatment
0.76	SAMEA7025245	SAMEA112904855	Probiotic
0.76	SAMEA7025235	SAMEA112905289	Probiotic
0.76	SAMEA7697583	SAMEA112904905	Probiotic
0.75	SAMEA7025239	SAMEA112905167	Probiotic
0.75	SAMEA10104992	SAMEA112905146	Prebiotic
0.75	SAMEA9449874	SAMEA112905232	Prebiotic
0.74	SAMEA9449894	SAMEA112905203	Probiotic
0.74	SAMEA7571801	SAMEA112904766	Probiotic
0.74	SAMEA14099425	SAMEA112905180	Prebiotic
0.74	SAMEA10145564	SAMEA112905104	Control