HoloFood Data Portal

Access samples and data collected and generated by the HoloFood project.

MGYG000318055

Details for MGYG000318055, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Enorma massiliensis Bacteria > Actinobacteriota > Coriobacteriia > Coriobacteriales > Coriobacteriaceae > Enorma > Enorma massiliensis
Cluster representative

MGYG000313705

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000313705 on MGnify
 Show other genomes in cluster
Annotations

MGYG000318055’s cluster representative genome MGYG000313705 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000313705 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000318055 Copy API Endpoint
Samples containing this genome

MGYG000318055’s cluster representative (MGYG000313705) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000313705’s sequence. Because MGYG000318055 has been clustered with MGYG000313705 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000318055.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000313705

 Download all as TSV
Containment Sample accession Animal accession Treatment
0.76 SAMEA9449928 Prebiotic
0.71 SAMEA9449941 Prebiotic
0.65 SAMEA7025274 Probiotic
0.63 SAMEA7025275 Probiotic
0.57 SAMEA14099425 Prebiotic
0.55 SAMEA7697617 Prebiotic
0.51 SAMEA9449944 Control
0.50 SAMEA7025283 Control
0.49 SAMEA10145586 Control
0.48 SAMEA10105072 Prebiotic