HoloFood Data Portal

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MGYG000318053

Details for MGYG000318053, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Egerieisoma sp900543695 Bacteria > Firmicutes_A > Clostridia > UBA1212 > UBA1255 > Egerieisoma > Egerieisoma sp900543695
Cluster representative

MGYG000319883

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000319883 on MGnify
 Show other genomes in cluster
Annotations

MGYG000318053’s cluster representative genome MGYG000319883 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000319883 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000318053 Copy API Endpoint
Samples containing this genome

MGYG000318053’s cluster representative (MGYG000319883) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000319883’s sequence. Because MGYG000318053 has been clustered with MGYG000319883 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000318053.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000319883

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Containment Sample accession Animal accession Treatment
0.68 SAMEA10105072 Prebiotic
0.65 SAMEA10104987 Control
0.65 SAMEA7722479 Prebiotic
0.64 SAMEA7025283 Control
0.64 SAMEA9449943 Control
0.64 SAMEA7571832 Control
0.63 SAMEA7697608 Control
0.63 SAMEA10105033 Prebiotic
0.62 SAMEA7025242 Control
0.61 SAMEA9449913 Probiotic