HoloFood Data Portal

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MGYG000317687

Details for MGYG000317687, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
CAG-273 Bacteria > Firmicutes_A > Clostridia > TANB77 > CAG-508 > CAG-273
Cluster representative

MGYG000315953

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000315953 on MGnify
 Show other genomes in cluster
Annotations

MGYG000317687’s cluster representative genome MGYG000315953 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000315953 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000317687 Copy API Endpoint
Samples containing this genome

MGYG000317687’s cluster representative (MGYG000315953) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000315953’s sequence. Because MGYG000317687 has been clustered with MGYG000315953 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000317687.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000315953

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Containment Sample accession Animal accession Treatment
0.82 SAMEA9449836 Probiotic
0.82 SAMEA7025240 Probiotic
0.82 SAMEA9449962 Control
0.82 SAMEA10104937 Prebiotic
0.82 SAMEA9449865 Control
0.81 SAMEA7571765 Probiotic
0.81 SAMEA10104996 Prebiotic
0.81 SAMEA9449856 Prebiotic
0.81 SAMEA10105016 Probiotic
0.81 SAMEA9449956 Probiotic