HoloFood Data Portal

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MGYG000317403

Details for MGYG000317403, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Gallimonas intestinavium Bacteria > Firmicutes_A > Clostridia > Christensenellales > Borkfalkiaceae > Gallimonas > Gallimonas intestinavium
Cluster representative

MGYG000318311

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000318311 on MGnify
 Show other genomes in cluster
Annotations

MGYG000317403’s cluster representative genome MGYG000318311 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000318311 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000317403 Copy API Endpoint
Samples containing this genome

MGYG000317403’s cluster representative (MGYG000318311) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000318311’s sequence. Because MGYG000317403 has been clustered with MGYG000318311 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000317403.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000318311

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Containment Sample accession Animal accession Treatment
0.22 SAMEA9449834 Probiotic
0.22 SAMEA7025271 Probiotic
0.22 SAMEA10159263 Prebiotic
0.21 SAMEA7025265 Probiotic
0.21 SAMEA10145560 Control
0.21 SAMEA10105048 Control
0.21 SAMEA10455497 Probiotic
0.21 SAMEA10104968 Prebiotic
0.21 SAMEA7025287 Prebiotic
0.21 SAMEA10455479 Prebiotic