MGYG000316999

Taxonomy

Gemmiger stercorigallinarum Bacteria > Firmicutes_A > Clostridia > Oscillospirales > Ruminococcaceae > Gemmiger > Gemmiger stercorigallinarum

Cluster representative

MGYG000319054

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000319054 on MGnify
 Show other genomes in cluster

Annotations

MGYG000316999’s cluster representative genome MGYG000319054 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000319054 from each CAZy category.

API endpoint

/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000316999 Copy API Endpoint

MGYG000316999’s cluster representative (MGYG000319054) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000319054’s sequence. Because MGYG000316999 has been clustered with MGYG000319054 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000316999.

Filter containing samples

Sample accession contains

Sample animal accession contains

Minimum containment

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000319054

 Download all as TSV

Containment	Sample accession	Animal accession	Treatment
1.00	SAMEA7697588	SAMEA112905360	Probiotic
0.99	SAMEA10105005	SAMEA112904853	Probiotic
0.99	SAMEA10455501	SAMEA112905013	Probiotic
0.97	SAMEA9449856	SAMEA112905272	Prebiotic
0.97	SAMEA10105046	SAMEA112904997	Control
0.97	SAMEA10104979	SAMEA112905042	Probiotic
0.96	SAMEA10145564	SAMEA112905104	Control
0.93	SAMEA9449952	SAMEA112905334	Probiotic
0.91	SAMEA9449883	SAMEA112904892	Control
0.90	SAMEA7025260	SAMEA112905317	Prebiotic