HoloFood Data Portal

Access samples and data collected and generated by the HoloFood project.

MGYG000316872

Details for MGYG000316872, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Merdisoma sp002160825 Bacteria > Firmicutes_A > Clostridia > Lachnospirales > Lachnospiraceae > Merdisoma > Merdisoma sp002160825
Cluster representative

MGYG000319232

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000319232 on MGnify
 Show other genomes in cluster
Annotations

MGYG000316872’s cluster representative genome MGYG000319232 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000319232 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000316872 Copy API Endpoint
Samples containing this genome

MGYG000316872’s cluster representative (MGYG000319232) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000319232’s sequence. Because MGYG000316872 has been clustered with MGYG000319232 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000316872.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000319232

 Download all as TSV
Containment Sample accession Animal accession Treatment
0.99 SAMEA7025277 Control
0.98 SAMEA7025269 Probiotic
0.98 SAMEA7571788 Control
0.98 SAMEA7025261 Probiotic
0.97 SAMEA7571775 Control
0.97 SAMEA7571858 Probiotic
0.96 SAMEA10455479 Prebiotic
0.96 SAMEA7571810 Prebiotic
0.95 SAMEA10105016 Probiotic
0.94 SAMEA7571823 Probiotic