HoloFood Data Portal

Access samples and data collected and generated by the HoloFood project.

MGYG000316196

Details for MGYG000316196, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Limosilactobacillus oris Bacteria > Firmicutes > Bacilli > Lactobacillales > Lactobacillaceae > Limosilactobacillus > Limosilactobacillus oris
Cluster representative

MGYG000308307

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000308307 on MGnify
 Show other genomes in cluster
Annotations

MGYG000316196’s cluster representative genome MGYG000308307 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000308307 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000316196 Copy API Endpoint
Samples containing this genome

MGYG000316196’s cluster representative (MGYG000308307) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000308307’s sequence. Because MGYG000316196 has been clustered with MGYG000308307 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000316196.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000308307

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Containment Sample accession Animal accession Treatment
0.77 SAMEA7571829 Prebiotic
0.77 SAMEA10130029 Prebiotic
0.77 SAMEA7025280 Probiotic
0.77 SAMEA10105036 Probiotic
0.77 SAMEA10130067 Prebiotic
0.77 SAMEA7368177 Probiotic
0.76 SAMEA10104932 Control
0.76 SAMEA7571823 Probiotic
0.76 SAMEA10158033 Prebiotic
0.76 SAMEA10130019 Control