HoloFood Data Portal

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MGYG000316189

Details for MGYG000316189, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Heritagella gallinarum Bacteria > Firmicutes_A > Clostridia > Oscillospirales > Acutalibacteraceae > Heritagella > Heritagella gallinarum
Cluster representative

MGYG000310347

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000310347 on MGnify
 Show other genomes in cluster
Annotations

MGYG000316189’s cluster representative genome MGYG000310347 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000310347 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000316189 Copy API Endpoint
Samples containing this genome

MGYG000316189’s cluster representative (MGYG000310347) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000310347’s sequence. Because MGYG000316189 has been clustered with MGYG000310347 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000316189.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000310347

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Containment Sample accession Animal accession Treatment
0.81 SAMEA9449956 Probiotic
0.81 SAMEA9449907 Prebiotic
0.81 SAMEA7722474 Prebiotic
0.81 SAMEA7571823 Probiotic
0.80 SAMEA9449879 Probiotic
0.79 SAMEA7571849 Prebiotic
0.78 SAMEA7571810 Prebiotic
0.78 SAMEA10104950 Prebiotic
0.78 SAMEA10104967 Prebiotic
0.78 SAMEA10104916 Prebiotic