HoloFood Data Portal

Access samples and data collected and generated by the HoloFood project.

MGYG000316079

Details for MGYG000316079, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Caccenecus avistercoris Bacteria > Firmicutes > Bacilli > RF39 > UBA660 > Caccenecus > Caccenecus avistercoris
Cluster representative

MGYG000320396

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000320396 on MGnify
 Show other genomes in cluster
Annotations

MGYG000316079’s cluster representative genome MGYG000320396 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000320396 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000316079 Copy API Endpoint
Samples containing this genome

MGYG000316079’s cluster representative (MGYG000320396) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000320396’s sequence. Because MGYG000316079 has been clustered with MGYG000320396 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000316079.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000320396

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Containment Sample accession Animal accession Treatment
0.74 SAMEA10455486 Control
0.74 SAMEA10145587 Control
0.74 SAMEA10455496 Control
0.74 SAMEA9449913 Probiotic
0.74 SAMEA10104959 Prebiotic
0.73 SAMEA10104930 Control
0.73 SAMEA7571780 Control
0.73 SAMEA10104988 Control
0.73 SAMEA9449833 Probiotic
0.73 SAMEA10104992 Prebiotic