HoloFood Data Portal

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MGYG000315915

Details for MGYG000315915, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Eisenbergiella sp904392525 Bacteria > Firmicutes_A > Clostridia > Lachnospirales > Lachnospiraceae > Eisenbergiella > Eisenbergiella sp904392525
Cluster representative

MGYG000313642

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000313642 on MGnify
 Show other genomes in cluster
Annotations

MGYG000315915’s cluster representative genome MGYG000313642 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000313642 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000315915 Copy API Endpoint
Samples containing this genome

MGYG000315915’s cluster representative (MGYG000313642) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000313642’s sequence. Because MGYG000315915 has been clustered with MGYG000313642 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000315915.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000313642

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Containment Sample accession Animal accession Treatment
0.34 SAMEA10159257 Control
0.34 SAMEA10104951 Prebiotic
0.33 SAMEA10536118 Probiotic
0.33 SAMEA10455485 Control
0.33 SAMEA10159253 Probiotic
0.33 SAMEA9449932 Prebiotic
0.32 SAMEA7571861 Control
0.32 SAMEA9449885 Control
0.32 SAMEA7697618 Prebiotic
0.31 SAMEA10104918 Probiotic