HoloFood Data Portal

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MGYG000315751

Details for MGYG000315751, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Galligastranaerophilus_A Bacteria > Cyanobacteria > Vampirovibrionia > Gastranaerophilales > RUG14156 > Galligastranaerophilus_A
Cluster representative

MGYG000320586

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000320586 on MGnify
 Show other genomes in cluster
Annotations

MGYG000315751’s cluster representative genome MGYG000320586 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000320586 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000315751 Copy API Endpoint
Samples containing this genome

MGYG000315751’s cluster representative (MGYG000320586) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000320586’s sequence. Because MGYG000315751 has been clustered with MGYG000320586 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000315751.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000320586

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Containment Sample accession Animal accession Treatment
0.27 SAMEA7571863 Probiotic
0.27 SAMEA7025265 Probiotic
0.27 SAMEA10105065 Prebiotic
0.27 SAMEA7697609 Probiotic
0.27 SAMEA10105030 Prebiotic
0.27 SAMEA10104968 Prebiotic
0.27 SAMEA9449941 Prebiotic
0.26 SAMEA10105025 Prebiotic
0.26 SAMEA10105045 Control
0.25 SAMEA10455493 Probiotic