HoloFood Data Portal

Access samples and data collected and generated by the HoloFood project.

MGYG000315685

Details for MGYG000315685, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Pseudobutyricicoccus lothianensis Bacteria > Firmicutes_A > Clostridia > Oscillospirales > Butyricicoccaceae > Pseudobutyricicoccus > Pseudobutyricicoccus lothianensis
Cluster representative

MGYG000307985

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000307985 on MGnify
 Show other genomes in cluster
Annotations

MGYG000315685’s cluster representative genome MGYG000307985 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000307985 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000315685 Copy API Endpoint
Samples containing this genome

MGYG000315685’s cluster representative (MGYG000307985) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000307985’s sequence. Because MGYG000315685 has been clustered with MGYG000307985 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000315685.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000307985

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Containment Sample accession Animal accession Treatment
0.44 SAMEA7697598 Control
0.44 SAMEA9449928 Prebiotic
0.44 SAMEA10159265 Probiotic
0.44 SAMEA7025269 Probiotic
0.43 SAMEA10104922 Prebiotic
0.43 SAMEA7025281 Probiotic
0.43 SAMEA7571819 Probiotic
0.42 SAMEA10105067 Prebiotic
0.42 SAMEA10145585 Control
0.42 SAMEA10104950 Prebiotic