MGYG000315399

Taxonomy

Merdicola sp001915925 Bacteria > Firmicutes_A > Clostridia > TANB77 > CAG-508 > Merdicola > Merdicola sp001915925

Cluster representative

MGYG000314365

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000314365 on MGnify
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Annotations

MGYG000315399’s cluster representative genome MGYG000314365 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000314365 from each CAZy category.

API endpoint

/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000315399 Copy API Endpoint

MGYG000315399’s cluster representative (MGYG000314365) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000314365’s sequence. Because MGYG000315399 has been clustered with MGYG000314365 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000315399.

Filter containing samples

Sample accession contains

Sample animal accession contains

Minimum containment

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000314365

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Containment	Sample accession	Animal accession	Treatment
0.74	SAMEA10105065	SAMEA112904742	Prebiotic
0.74	SAMEA7697581	SAMEA112905343	Probiotic
0.74	SAMEA10159262	SAMEA112904822	Prebiotic
0.74	SAMEA9449854	SAMEA112905061	Prebiotic
0.74	SAMEA7571765	SAMEA112905077	Probiotic
0.74	SAMEA7025282	SAMEA112905191	Control
0.74	SAMEA9449873	SAMEA112904851	Prebiotic
0.73	SAMEA7571812	SAMEA112905208	Control
0.73	SAMEA7025266	SAMEA112905005	Probiotic
0.73	SAMEA9449941	SAMEA112905247	Prebiotic