HoloFood Data Portal

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MGYG000315399

Details for MGYG000315399, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Merdicola sp001915925 Bacteria > Firmicutes_A > Clostridia > TANB77 > CAG-508 > Merdicola > Merdicola sp001915925
Cluster representative

MGYG000314365

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000314365 on MGnify
 Show other genomes in cluster
Annotations

MGYG000315399’s cluster representative genome MGYG000314365 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000314365 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000315399 Copy API Endpoint
Samples containing this genome

MGYG000315399’s cluster representative (MGYG000314365) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000314365’s sequence. Because MGYG000315399 has been clustered with MGYG000314365 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000315399.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000314365

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Containment Sample accession Animal accession Treatment
0.87 SAMEA10159257 Control
0.86 SAMEA7697623 Probiotic
0.85 SAMEA9449954 Probiotic
0.85 SAMEA9449864 Control
0.84 SAMEA10145599 Control
0.83 SAMEA10145595 Control
0.83 SAMEA7697617 Prebiotic
0.82 SAMEA7571814 Prebiotic
0.81 SAMEA7571827 Probiotic
0.80 SAMEA7571775 Control