HoloFood Data Portal

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MGYG000315294

Details for MGYG000315294, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Gallimonas sp900548845 Bacteria > Firmicutes_A > Clostridia > Christensenellales > Borkfalkiaceae > Gallimonas > Gallimonas sp900548845
Cluster representative

MGYG000311653

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000311653 on MGnify
 Show other genomes in cluster
Annotations

MGYG000315294’s cluster representative genome MGYG000311653 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000311653 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000315294 Copy API Endpoint
Samples containing this genome

MGYG000315294’s cluster representative (MGYG000311653) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000311653’s sequence. Because MGYG000315294 has been clustered with MGYG000311653 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000315294.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000311653

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Containment Sample accession Animal accession Treatment
0.56 SAMEA10105021 Probiotic
0.56 SAMEA7025235 Probiotic
0.56 SAMEA10105000 Control
0.55 SAMEA9449866 Probiotic
0.55 SAMEA10159263 Prebiotic
0.55 SAMEA10455479 Prebiotic
0.55 SAMEA7697577 Prebiotic
0.54 SAMEA7571820 Probiotic
0.54 SAMEA10104968 Prebiotic
0.53 SAMEA7697600 Prebiotic