HoloFood Data Portal

Access samples and data collected and generated by the HoloFood project.

MGYG000315231

Details for MGYG000315231, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
WRFS01 Bacteria > Firmicutes_A > Clostridia > TANB77 > CAG-508 > WRFS01
Cluster representative

MGYG000313810

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000313810 on MGnify
 Show other genomes in cluster
Annotations

MGYG000315231’s cluster representative genome MGYG000313810 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000313810 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000315231 Copy API Endpoint
Samples containing this genome

MGYG000315231’s cluster representative (MGYG000313810) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000313810’s sequence. Because MGYG000315231 has been clustered with MGYG000313810 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000315231.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000313810

 Download all as TSV
Containment Sample accession Animal accession Treatment
0.33 SAMEA9449854 Prebiotic
0.33 SAMEA10105068 Prebiotic
0.31 SAMEA7025239 Probiotic
0.30 SAMEA10104941 Probiotic
0.29 SAMEA10104945 Probiotic
0.29 SAMEA9449878 Control
0.29 SAMEA10104957 Control
0.29 SAMEA10104988 Control
0.29 SAMEA9449841 Probiotic
0.28 SAMEA14099421 Control