HoloFood Data Portal

Access samples and data collected and generated by the HoloFood project.

MGYG000314831

Details for MGYG000314831, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Ruthenibacterium Bacteria > Firmicutes_A > Clostridia > Oscillospirales > Ruminococcaceae > Ruthenibacterium
Cluster representative

MGYG000315476

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000315476 on MGnify
 Show other genomes in cluster
Annotations

MGYG000314831’s cluster representative genome MGYG000315476 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000315476 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000314831 Copy API Endpoint
Samples containing this genome

MGYG000314831’s cluster representative (MGYG000315476) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000315476’s sequence. Because MGYG000314831 has been clustered with MGYG000315476 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000314831.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000315476

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Containment Sample accession Animal accession Treatment
0.99 SAMEA9449907 Prebiotic
0.99 SAMEA7722476 Control
0.99 SAMEA9449839 Control
0.99 SAMEA10104915 Control
0.99 SAMEA10104941 Probiotic
0.99 SAMEA10454442 Probiotic
0.99 SAMEA10104928 Prebiotic
0.98 SAMEA7025246 Probiotic
0.98 SAMEA10104992 Prebiotic
0.98 SAMEA7571820 Probiotic