HoloFood Data Portal

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MGYG000314235

Details for MGYG000314235, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
DSM-108975 sp014982715 Bacteria > Bacteroidota > Bacteroidia > Bacteroidales > Rikenellaceae > DSM-108975 > DSM-108975 sp014982715
Cluster representative

MGYG000310973

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000310973 on MGnify
 Show other genomes in cluster
Annotations

MGYG000314235’s cluster representative genome MGYG000310973 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000310973 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000314235 Copy API Endpoint
Samples containing this genome

MGYG000314235’s cluster representative (MGYG000310973) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000310973’s sequence. Because MGYG000314235 has been clustered with MGYG000310973 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000314235.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000310973

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Containment Sample accession Animal accession Treatment
0.24 SAMEA10105052 Control
0.23 SAMEA7697630 Control
0.23 SAMEA10104978 Control
0.23 SAMEA14099425 Prebiotic
0.22 SAMEA9449946 Prebiotic
0.22 SAMEA7571832 Control
0.22 SAMEA7571845 Control
0.21 SAMEA10105017 Probiotic
0.21 SAMEA10105072 Prebiotic
0.21 SAMEA10145576 Control